Pedobacter yonginense strain KCTC22721

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter yonginense strain KCTC22721 is characterized by the presence of flagella, which likely contributes to its motility in various environments. This strain is notable for having a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genomic information for Pedobacter yonginense strain KCTC22721 is accessible under the accession number QGNZ00000000.1, providing a resource for further genomic studies and comparative analyses within the genus Pedobacter. The presence of flagella suggests that this strain may inhabit dynamic environments where movement is essential for survival, such as soil or aquatic ecosystems. The ability to move toward favorable conditions or away from harmful stimuli could enhance its ecological fitness. Understanding the motility mechanisms and genomic features of Pedobacter yonginense strain KCTC22721 may offer insights into its ecological roles, including nutrient cycling and interactions with other microorganisms. These traits underline the importance of this strain in microbial ecology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter yonginense
Strainstrain KCTC22721

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter yonginense strain KCTC22721 contig28, whole genome

Gene Summary

Adenine Count

1361659 bp

Thymine Count

1348103 bp

Guanine Count

832125 bp

Cytosine Count

830530 bp

Genome Length

4372417 bp

Protein-coding Genes

3747 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDHW03_09175Not AvailablePositive2115693 - 21158787268.83
pp_01809DHW03_09180Not AvailablePositive2116479 - 2116946Not Available
superoxide dismutaseDHW03_09185Not AvailablePositive2117073 - 211768122462.4
hypothetical proteinDHW03_09190Not AvailablePositive2117782 - 211824017417.0
dna-binding transcriptional regulator oxyrDHW03_09195Not AvailableNegative2118401 - 211933335153.2
gdp-fucose synthetaseDHW03_09200Not AvailableNegative2119433 - 212035934804.7
trna (guanosine(46)-n7)-methyltransferase trmbDHW03_09205Not AvailablePositive2120474 - 212112425288.1
cysteine methyltransferaseDHW03_09210Not AvailablePositive2121125 - 212145712190.9
carboxymuconolactone decarboxylase family proteinDHW03_09215Not AvailablePositive2121511 - 212185813055.7
hypothetical proteinDHW03_09220Not AvailableNegative2121924 - 212260424713.9

Displaying genes 1821 – 1830 of 3799 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.