Pedobacter yonginense strain KCTC22721

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter yonginense strain KCTC22721 is characterized by the presence of flagella, which likely contributes to its motility in various environments. This strain is notable for having a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genomic information for Pedobacter yonginense strain KCTC22721 is accessible under the accession number QGNZ00000000.1, providing a resource for further genomic studies and comparative analyses within the genus Pedobacter. The presence of flagella suggests that this strain may inhabit dynamic environments where movement is essential for survival, such as soil or aquatic ecosystems. The ability to move toward favorable conditions or away from harmful stimuli could enhance its ecological fitness. Understanding the motility mechanisms and genomic features of Pedobacter yonginense strain KCTC22721 may offer insights into its ecological roles, including nutrient cycling and interactions with other microorganisms. These traits underline the importance of this strain in microbial ecology and its potential applications in bioremediation or other biotechnological processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter yonginense
Strainstrain KCTC22721

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter yonginense strain KCTC22721 contig28, whole genome

Gene Summary

Adenine Count

1361659 bp

Thymine Count

1348103 bp

Guanine Count

832125 bp

Cytosine Count

830530 bp

Genome Length

4372417 bp

Protein-coding Genes

3747 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolaseDHW03_07355Not AvailableNegative1662423 - 166405760235.9
dna mismatch repair endonuclease mutlDHW03_07360Not AvailablePositive1664234 - 166606968534.8
rhomboid family intramembrane serine proteaseDHW03_07365Not AvailablePositive1666097 - 166681027168.6
rhomboid family intramembrane serine proteaseDHW03_07370Not AvailablePositive1666803 - 166765731558.9
endonucleaseDHW03_07375Not AvailablePositive1667657 - 166876642455.5
nad(p)h-dependent oxidoreductaseDHW03_07380Not AvailablePositive1668857 - 166948923392.0
hypothetical proteinDHW03_07385Not AvailablePositive1670116 - 167276197072.7
d-glycerate dehydrogenaseDHW03_07390Not AvailableNegative1673306 - 167426534831.4
duf4249 domain-containing proteinDHW03_07395Not AvailableNegative1674338 - 167513829542.8
hypothetical proteinDHW03_07400Not AvailableNegative1675145 - 167746986964.2

Displaying genes 1461 – 1470 of 3799 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.