Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-forming succinate--coa ligase subunit beta | DI534_04960 | Not Available | Positive | 1047202 - 1048365 | 39940.7 |
| succinate--coa ligase subunit alpha | DI534_04965 | Not Available | Positive | 1048377 - 1049267 | 29811.0 |
| serine hydrolase | DI534_04970 | Not Available | Positive | 1049413 - 1050807 | 50127.2 |
| hypothetical protein | DI534_04975 | Not Available | Positive | 1050885 - 1052264 | 47756.6 |
| alpha/beta hydrolase | DI534_04980 | Not Available | Positive | 1052269 - 1053828 | 54743.0 |
| hypothetical protein | DI534_04985 | Not Available | Positive | 1053848 - 1055086 | 41578.6 |
| phosphoribosylglycinamide formyltransferase | DI534_04990 | Not Available | Positive | 1055297 - 1055884 | 20861.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase | DI534_04995 | Not Available | Positive | 1055881 - 1057521 | 57116.5 |
| mfs transporter | DI534_05000 | Not Available | Negative | 1057738 - 1059282 | 52554.4 |
| abc transporter | DI534_05005 | Not Available | Positive | 1059485 - 1061311 | 66951.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
