Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | SE134 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
535083 bp
Thymine Count
536034 bp
Guanine Count
1265767 bp
Cytosine Count
1259877 bp
Genome Length
3596761 bp
Protein-coding Genes
3528 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Dna polymerase iii epsilon subunit | A0130_RS03160 | Not Available | Positive | 627819 - 628505 | 25255.9 |
| duf4190 domain-containing protein | A0130_RS03165 | Not Available | Positive | 628578 - 628901 | 11324.0 |
| Attl | Not Available | Not Available | Positive | 628982 - 628999 | Not Available |
| Integrase | A0130_RS03170 | Not Available | Positive | 629022 - 630329 | 48106.1 |
| hypothetical protein | A0130_RS18065 | Not Available | Positive | 630521 - 630688 | 5979.08 |
| Helix-turn-helix dna binding protein | A0130_RS03175 | Not Available | Positive | 631014 - 631337 | 11703.8 |
| Rna polymerase | A0130_RS03180 | Not Available | Positive | 631382 - 632077 | 24698.0 |
| Head-to-tail adaptor | A0130_RS03185 | Not Available | Positive | 632226 - 632618 | 13372.9 |
| Major capsid protein | A0130_RS03190 | Not Available | Positive | 632838 - 633752 | 31696.1 |
| Attr | Not Available | Not Available | Positive | 637710 - 637727 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |