Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts mannitol transporter subunit iia | DI534_04655 | Not Available | Positive | 986125 - 986565 | 15893.7 |
| translation initiation factor if-1 | DI534_04660 | Not Available | Positive | 986707 - 986928 | 8422.41 |
| 50s ribosomal protein l36 | DI534_04665 | Not Available | Positive | 986984 - 987100 | 4414.6 |
| 30s ribosomal protein s13 | DI534_04670 | Not Available | Positive | 987303 - 987683 | 14147.2 |
| 30s ribosomal protein s11 | DI534_04675 | Not Available | Positive | 987683 - 988081 | 13875.6 |
| dna-directed rna polymerase subunit alpha | DI534_04680 | Not Available | Positive | 988226 - 989218 | 35813.4 |
| 50s ribosomal protein l17 | DI534_04685 | Not Available | Positive | 989264 - 989803 | 19421.2 |
| acetyltransferase | DI534_04690 | Not Available | Negative | 989952 - 992093 | 74674.1 |
| trna pseudouridine(38-40) synthase trua | DI534_04695 | Not Available | Positive | 992173 - 993072 | 32169.2 |
| 50s ribosomal protein l13 | DI534_04700 | Not Available | Positive | 993203 - 993649 | 16137.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
