Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DI534_00405 | Not Available | Positive | 83586 - 84926 | 46801.2 |
| rna polymerase sigma factor | DI534_00410 | Not Available | Positive | 85060 - 86496 | 52085.0 |
| f420-0--gamma-glutamyl ligase | DI534_00415 | Not Available | Positive | 86520 - 87236 | 26506.3 |
| is481 family transposase | DI534_00420 | Not Available | Negative | 87255 - 88214 | 36259.1 |
| alanine racemase | DI534_00425 | Not Available | Negative | 88311 - 89375 | 36525.4 |
| alanine racemase | DI534_00430 | Not Available | Negative | 89372 - 90070 | 23931.7 |
| hypothetical protein | DI534_00435 | Not Available | Negative | 90063 - 90290 | 8123.55 |
| hypothetical protein | DI534_00440 | Not Available | Positive | 90450 - 91730 | 41380.2 |
| dna topoisomerase iv subunit b | DI534_00445 | Not Available | Positive | 91784 - 93856 | 75224.9 |
| dna topoisomerase iv | DI534_00450 | Not Available | Negative | 93901 - 96372 | 87597.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
