Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sprt domain-containing protein | DI534_04400 | Not Available | Negative | 936412 - 936894 | 17690.0 |
| spermine synthase | DI534_04405 | Not Available | Negative | 936936 - 937757 | 28986.1 |
| hypothetical protein | DI534_04410 | Not Available | Positive | 937978 - 938751 | 26132.4 |
| dna-directed rna polymerase subunit beta | DI534_04415 | Not Available | Positive | 939098 - 942577 | 127068.0 |
| dna-directed rna polymerase subunit beta' | DI534_04420 | Not Available | Positive | 942628 - 946500 | 142507.0 |
| hypothetical protein | DI534_04425 | Not Available | Positive | 946733 - 947557 | 28618.7 |
| hypothetical protein | DI534_04430 | Not Available | Positive | 947532 - 947975 | 15527.2 |
| type ii secretion system protein gspe | DI534_04435 | Not Available | Positive | 948086 - 949744 | 60431.8 |
| type iv pili twitching motility protein pilt | DI534_04440 | Not Available | Positive | 950127 - 951332 | 43166.6 |
| type ii secretion system f family protein | DI534_04445 | Not Available | Positive | 951332 - 952585 | 44624.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
