Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DI534_04245 | Not Available | Positive | 906026 - 906991 | 35132.0 |
| abc transporter permease | DI534_04250 | Not Available | Positive | 906991 - 907869 | 32370.5 |
| carbohydrate kinase family protein | DI534_04255 | Not Available | Positive | 907866 - 908792 | 30600.3 |
| hypothetical protein | DI534_04260 | Not Available | Positive | 908402 - 909724 | 46019.8 |
| hypothetical protein | DI534_04265 | Not Available | Positive | 909756 - 911525 | 63505.4 |
| arac family transcriptional regulator | DI534_04270 | Not Available | Negative | 911553 - 912332 | 28328.8 |
| duf2000 domain-containing protein | DI534_04275 | Not Available | Positive | 912382 - 912825 | 15737.0 |
| d-alanyl-d-alanine carboxypeptidase | DI534_04280 | Not Available | Positive | 912968 - 914350 | 47593.9 |
| transcriptional regulator | DI534_04285 | Not Available | Negative | 914447 - 915088 | 22602.6 |
| glyoxalase | DI534_04290 | Not Available | Negative | 915091 - 915525 | 15786.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
