Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DI534_04145 | Not Available | Positive | 886307 - 886876 | 21018.6 |
| rnd transporter | DI534_04150 | Not Available | Positive | 887077 - 888342 | 40461.6 |
| abc transporter | DI534_04155 | Not Available | Positive | 888339 - 889043 | 25003.9 |
| macrolide abc transporter permease | DI534_04160 | Not Available | Positive | 889040 - 890272 | 41693.9 |
| hypothetical protein | DI534_04165 | Not Available | Positive | 890280 - 892025 | 55482.4 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | DI534_04170 | Not Available | Negative | 892102 - 893238 | 40450.6 |
| transcriptional regulator | DI534_04175 | Not Available | Negative | 893449 - 893856 | 14994.1 |
| doxx family protein | DI534_04180 | Not Available | Positive | 893967 - 894332 | 12156.7 |
| hypothetical protein | DI534_04185 | Not Available | Positive | 894314 - 895258 | 34900.8 |
| hypothetical protein | DI534_04190 | Not Available | Positive | 895341 - 895967 | 22358.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
