Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rdd family protein | DI534_00355 | Not Available | Positive | 72517 - 72939 | 15350.1 |
| hypothetical protein | DI534_00360 | Not Available | Positive | 73097 - 74047 | 31984.5 |
| duf4191 domain-containing protein | DI534_00365 | Not Available | Negative | 74063 - 74764 | 25355.7 |
| lipoyl synthase | DI534_00370 | Not Available | Negative | 74786 - 75778 | 36913.9 |
| lipoate--protein ligase b | DI534_00375 | Not Available | Negative | 75775 - 76434 | 23246.9 |
| hypothetical protein | DI534_00380 | Not Available | Positive | 76544 - 77947 | 48234.2 |
| 2-oxoglutarate dehydrogenase, e2 component, dihydrolipoamide succinyltransferase | DI534_00385 | Not Available | Negative | 77944 - 79521 | 53551.6 |
| dihydrolipoyl dehydrogenase | DI534_00390 | Not Available | Negative | 79570 - 80940 | 47760.3 |
| leucyl aminopeptidase | DI534_00395 | Not Available | Negative | 81038 - 82528 | 50438.5 |
| pac2 family protein | DI534_00400 | Not Available | Positive | 82633 - 83544 | 33862.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
