Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium and cobalt transport protein cora | DI534_03840 | Not Available | Positive | 819271 - 820272 | 37875.2 |
| 3,4-dioxygenase subunit beta | DI534_03845 | Not Available | Positive | 820363 - 821379 | 34416.2 |
| sec-independent protein translocase tata | DI534_03850 | Not Available | Positive | 821436 - 821657 | 7494.14 |
| twin-arginine translocase subunit tatc | DI534_03855 | Not Available | Positive | 821684 - 822457 | 27304.9 |
| preprotein translocase | DI534_03860 | Not Available | Positive | 822459 - 822896 | 15353.3 |
| hypothetical protein | DI534_03865 | Not Available | Negative | 822884 - 823375 | 17760.0 |
| arsr family transcriptional regulator | DI534_03870 | Not Available | Negative | 823413 - 823751 | 12095.5 |
| nucleoside-diphosphate sugar epimerase | DI534_03875 | Not Available | Positive | 823822 - 824727 | 32541.6 |
| Trna-phe | Not Available | Not Available | Positive | 824757 - 824832 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 824891 - 824964 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
