Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i methionyl aminopeptidase | DI534_03535 | Not Available | Positive | 746815 - 747585 | 27129.0 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DI534_03540 | Not Available | Negative | 747582 - 748298 | 25878.9 |
| dna/rna helicase | DI534_03545 | Not Available | Positive | 748331 - 749353 | 37127.1 |
| ribosome maturation factor rimm | DI534_03550 | Not Available | Negative | 749375 - 749995 | 22506.5 |
| rna-binding protein | DI534_03555 | Not Available | Negative | 749992 - 750231 | 8453.06 |
| 30s ribosomal protein s16 | DI534_03560 | Not Available | Negative | 750235 - 750753 | 18650.8 |
| eama family transporter | DI534_03565 | Not Available | Negative | 750883 - 751836 | 32203.3 |
| hypothetical protein | DI534_03570 | Not Available | Positive | 752033 - 752479 | 16158.1 |
| llm class f420-dependent oxidoreductase | DI534_03575 | Not Available | Negative | 752569 - 753375 | 29842.3 |
| signal recognition particle protein | DI534_03580 | Not Available | Negative | 753491 - 755059 | 55402.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
