Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | DI534_00305 | Not Available | Positive | 59430 - 61076 | 60347.9 |
| type ii glyceraldehyde-3-phosphate dehydrogenase | DI534_00310 | Not Available | Positive | 61119 - 62177 | 37759.9 |
| hypothetical protein | DI534_00315 | Not Available | Positive | 62167 - 62475 | 10956.0 |
| eama family transporter | DI534_00320 | Not Available | Positive | 62472 - 63488 | 35414.9 |
| copper oxidase | DI534_00325 | Not Available | Positive | 63485 - 64999 | 54211.1 |
| conjugal transfer protein | DI534_00330 | Not Available | Positive | 65208 - 68747 | 126883.0 |
| hypothetical protein | DI534_00335 | Not Available | Positive | 68977 - 69411 | 15442.1 |
| adenylate/guanylate cyclase domain-containing protein | DI534_00340 | Not Available | Positive | 69422 - 70150 | 26590.7 |
| sulfate permease | DI534_00345 | Not Available | Positive | 70372 - 70755 | 14451.3 |
| type i glutamate--ammonia ligase | DI534_00350 | Not Available | Negative | 70949 - 72373 | 52967.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
