Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_03280 | Not Available | Negative | 694373 - 695503 | 39758.8 |
| hypothetical protein | DI534_03285 | Not Available | Positive | 694964 - 697141 | 78668.8 |
| nad-dependent dna ligase liga | DI534_03290 | Not Available | Negative | 697101 - 699425 | 83101.5 |
| trna 2-thiouridine(34) synthase mnma | DI534_03295 | Not Available | Negative | 699536 - 700633 | 38341.4 |
| cysteine desulfurase nifs | DI534_03300 | Not Available | Negative | 700702 - 701859 | 38844.1 |
| glycogen debranching enzyme glgx | DI534_03305 | Not Available | Positive | 701916 - 703961 | 75077.8 |
| cys-trna(pro) deacylase | DI534_03310 | Not Available | Positive | 703967 - 704437 | 16106.3 |
| hypothetical protein | DI534_03315 | Not Available | Negative | 704444 - 704680 | 8667.4 |
| duf3417 domain-containing protein | DI534_03320 | Not Available | Negative | 704801 - 707362 | 92467.0 |
| signal peptidase i | DI534_03325 | Not Available | Negative | 707400 - 708065 | 23932.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
