Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_03230 | Not Available | Negative | 682351 - 682533 | 6347.94 |
| ionic transporter y4ha | DI534_03235 | Not Available | Positive | 682603 - 683724 | 38552.1 |
| hypothetical protein | DI534_03240 | Not Available | Positive | 683778 - 684683 | 32385.2 |
| nadp oxidoreductase | DI534_03245 | Not Available | Positive | 684732 - 685388 | 23235.4 |
| deaminase | DI534_03250 | Not Available | Positive | 685539 - 686096 | 20812.8 |
| cell wall protein | DI534_03255 | Not Available | Negative | 686203 - 688962 | 92978.3 |
| hypothetical protein | DI534_03260 | Not Available | Positive | 689369 - 690604 | 44929.7 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit b | DI534_03265 | Not Available | Negative | 690815 - 692389 | 56450.0 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit a | DI534_03270 | Not Available | Negative | 692525 - 694024 | 51674.1 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit c | DI534_03275 | Not Available | Negative | 694021 - 694320 | 10473.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
