Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_02925 | Not Available | Negative | 620753 - 621199 | 15279.5 |
| hypothetical protein | DI534_02930 | Not Available | Negative | 621196 - 621642 | 15343.5 |
| pilus assembly protein tade | DI534_02935 | Not Available | Negative | 621647 - 622027 | 13188.0 |
| hypothetical protein | DI534_02940 | Not Available | Negative | 622285 - 622833 | 18859.9 |
| pilus assembly protein | DI534_02945 | Not Available | Negative | 622929 - 623867 | 32458.4 |
| type ii secretion system protein f | DI534_02950 | Not Available | Negative | 623864 - 624727 | 29847.2 |
| pilus assembly protein cpaf | DI534_02955 | Not Available | Negative | 624727 - 626061 | 47348.1 |
| Trna-leu | Not Available | Not Available | Positive | 626172 - 626255 | Not Available |
| cation transporter | DI534_02965 | Not Available | Positive | 626435 - 627436 | 35757.7 |
| transcriptional regulator | DI534_02970 | Not Available | Positive | 627542 - 627883 | 12640.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
