Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tmrna,resume consensus sequence (at 87): cataggtgccaacgttaa | Not Available | Not Available | Positive | 607352 - 607722 | Not Available |
| simpl domain-containing protein | DI534_02875 | Not Available | Positive | 607723 - 608511 | 27638.6 |
| ssra-binding protein | DI534_02880 | Not Available | Negative | 608598 - 609074 | 18029.5 |
| cell division protein ftsx | DI534_02885 | Not Available | Negative | 609203 - 610111 | 32679.2 |
| amino acid adenylation protein | DI534_02895 | Not Available | Positive | 611787 - 615779 | 139353.0 |
| peptidase m1 | DI534_02900 | Not Available | Positive | 615776 - 617101 | 48620.8 |
| 4-phosphopantetheinyl transferase | DI534_02905 | Not Available | Negative | 617153 - 617704 | 19151.2 |
| peptide chain release factor 2 | DI534_02910 | Not Available | Negative | 617710 - 618816 | 40308.3 |
| mfs transporter | DI534_02915 | Not Available | Positive | 618899 - 620128 | 41954.3 |
| hypothetical protein | DI534_02920 | Not Available | Negative | 620133 - 620669 | 17841.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
