Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | DI534_02770 | Not Available | Positive | 586436 - 587878 | 49883.8 |
| ribosome small subunit-dependent gtpase a | DI534_02775 | Not Available | Positive | 587917 - 588942 | 36116.6 |
| histidinol phosphatase | DI534_02780 | Not Available | Positive | 588983 - 589780 | 28682.0 |
| sugar abc transporter substrate-binding protein | DI534_02785 | Not Available | Positive | 589998 - 591059 | 36012.5 |
| sugar abc transporter atp-binding protein | DI534_02790 | Not Available | Positive | 591187 - 591942 | 26936.3 |
| abc transporter permease | DI534_02795 | Not Available | Positive | 591939 - 593255 | 45346.8 |
| bifunctional 2-methylcitrate synthase/citrate synthase | DI534_02800 | Not Available | Negative | 593348 - 594469 | 40926.7 |
| methylisocitrate lyase | DI534_02805 | Not Available | Negative | 594471 - 595379 | 32409.9 |
| 2-methylcitrate dehydratase | DI534_02810 | Not Available | Negative | 595379 - 596893 | 54398.9 |
| gntr family transcriptional regulator | DI534_02815 | Not Available | Negative | 596910 - 597551 | 22991.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
