Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine dehydrogenase | DI534_02510 | Not Available | Negative | 534772 - 536103 | 45635.5 |
| diaminopimelate decarboxylase | DI534_02515 | Not Available | Negative | 536104 - 537537 | 50731.8 |
| hypothetical protein | DI534_02520 | Not Available | Negative | 537612 - 538022 | 13835.5 |
| hypothetical protein | DI534_02525 | Not Available | Negative | 538061 - 538945 | 29851.8 |
| arginine--trna ligase | DI534_02530 | Not Available | Negative | 538854 - 540515 | 60161.9 |
| arginyl-trna synthetase | DI534_02535 | Not Available | Positive | 540584 - 541171 | 19037.1 |
| transglutaminase | DI534_02540 | Not Available | Negative | 541184 - 541984 | 28506.0 |
| Trna-arg | Not Available | Not Available | Positive | 542038 - 542113 | Not Available |
| glycerate kinase | DI534_02550 | Not Available | Positive | 542132 - 543250 | 35865.5 |
| rna polymerase subunit sigma | DI534_02555 | Not Available | Positive | 543388 - 544002 | 22350.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
