Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| llm class flavin-dependent oxidoreductase | DI534_02110 | Not Available | Negative | 443412 - 444464 | 37359.6 |
| 30s ribosome-binding factor rbfa | DI534_02115 | Not Available | Negative | 444528 - 444968 | 16088.7 |
| translation initiation factor if-2 | DI534_02120 | Not Available | Negative | 445127 - 447811 | 92859.2 |
| duf448 domain-containing protein | DI534_02125 | Not Available | Negative | 447901 - 448179 | 10096.1 |
| transcription elongation factor nusa | DI534_02130 | Not Available | Negative | 448241 - 449221 | 35128.1 |
| hypothetical protein | DI534_02135 | Not Available | Positive | 449371 - 449901 | 18964.7 |
| hypothetical protein | DI534_02140 | Not Available | Positive | 449909 - 451375 | 49695.4 |
| hypothetical protein | DI534_02145 | Not Available | Negative | 451510 - 452430 | 33595.8 |
| proline--trna ligase | DI534_02150 | Not Available | Negative | 452614 - 454386 | 63880.8 |
| hypothetical protein | DI534_02155 | Not Available | Negative | 454410 - 454910 | 17378.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
