Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional riboflavin kinase/fad synthetase | DI534_02060 | Not Available | Negative | 434948 - 435898 | 34077.6 |
| hypothetical protein | DI534_02065 | Not Available | Negative | 435898 - 436329 | 15152.9 |
| hypothetical protein | DI534_02070 | Not Available | Negative | 436341 - 436709 | 13120.8 |
| trna pseudouridine(55) synthase trub | DI534_02075 | Not Available | Negative | 436706 - 437611 | 31388.8 |
| tetr/acrr family transcriptional regulator | DI534_02080 | Not Available | Negative | 437602 - 438237 | 22886.5 |
| mfs transporter | DI534_02085 | Not Available | Positive | 438321 - 439802 | 50295.3 |
| 2-dehydropantoate 2-reductase | DI534_02090 | Not Available | Positive | 439832 - 440827 | 34080.5 |
| uridine kinase | DI534_02095 | Not Available | Negative | 440864 - 441532 | 25265.4 |
| adenine glycosylase | DI534_02100 | Not Available | Positive | 441555 - 442442 | 31432.9 |
| endonuclease viii | DI534_02105 | Not Available | Positive | 442556 - 443419 | 30917.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
