Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate--l-alanine ligase | DI534_01705 | Not Available | Negative | 354022 - 355419 | 49003.9 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | DI534_01710 | Not Available | Negative | 355430 - 356542 | 38935.7 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 357125 - 358653 | Not Available |
| putative lipid ii flippase ftsw | DI534_01715 | Not Available | Negative | 356539 - 357825 | 46086.2 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DI534_01720 | Not Available | Negative | 357770 - 359335 | 54336.4 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DI534_01725 | Not Available | Negative | 359320 - 360432 | 40127.7 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | DI534_01730 | Not Available | Negative | 360429 - 361844 | 49150.0 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DI534_01735 | Not Available | Negative | 361841 - 363403 | 55315.6 |
| penicillin-binding protein 2 | DI534_01740 | Not Available | Negative | 363464 - 365932 | 87777.6 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase | DI534_01745 | Not Available | Negative | 365865 - 366905 | 37640.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
