Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter | DI534_15770 | Not Available | Negative | 3330508 - 3331659 | 41311.9 |
| hypothetical protein | DI534_15775 | Not Available | Negative | 3331684 - 3332178 | 17403.3 |
| hypothetical protein | DI534_15780 | Not Available | Negative | 3332318 - 3333715 | 48543.0 |
| duf305 domain-containing protein | DI534_15785 | Not Available | Negative | 3333712 - 3334134 | 15020.0 |
| hypothetical protein | DI534_15790 | Not Available | Positive | 3334307 - 3334720 | 14388.2 |
| rna polymerase subunit sigma-24 | DI534_15795 | Not Available | Positive | 3334739 - 3335242 | 18931.6 |
| anti-sigma factor | DI534_15800 | Not Available | Positive | 3335245 - 3336021 | 27363.7 |
| lysr family transcriptional regulator | DI534_15805 | Not Available | Positive | 3336041 - 3336925 | 31408.6 |
| uracil-dna glycosylase | DI534_15810 | Not Available | Positive | 3336922 - 3337566 | 23344.0 |
| hypothetical protein | DI534_15815 | Not Available | Negative | 3337682 - 3338173 | 17436.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
