Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | DI534_15065 | Not Available | Negative | 3196960 - 3197877 | 33262.5 |
| nmra family transcriptional regulator | DI534_15070 | Not Available | Positive | 3198035 - 3198898 | 31152.5 |
| 3-oxoacyl-acp reductase | DI534_15075 | Not Available | Positive | 3198966 - 3199655 | 24820.9 |
| hypothetical protein | DI534_15080 | Not Available | Negative | 3200046 - 3200369 | 12254.5 |
| hypothetical protein | DI534_15085 | Not Available | Negative | 3200604 - 3200984 | 13718.3 |
| hypothetical protein | DI534_15090 | Not Available | Positive | 3201128 - 3201382 | 8140.57 |
| hypothetical protein | DI534_15095 | Not Available | Negative | 3201359 - 3201628 | 10105.1 |
| hypothetical protein | DI534_15100 | Not Available | Positive | 3201797 - 3202156 | 13720.6 |
| carbohydrate porin | DI534_15105 | Not Available | Positive | 3202456 - 3203841 | 49111.6 |
| nickel-responsive transcriptional regulator nikr | DI534_15110 | Not Available | Positive | 3203967 - 3204398 | 15892.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
