Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_01400 | Not Available | Negative | 299333 - 299707 | 14034.3 |
| glycerophosphodiester phosphodiesterase | DI534_01405 | Not Available | Negative | 299908 - 300699 | 27728.3 |
| hypothetical protein | DI534_01410 | Not Available | Negative | 300680 - 301648 | 35128.5 |
| hypothetical protein | DI534_01415 | Not Available | Negative | 301645 - 302184 | 18980.1 |
| short chain dehydrogenase | DI534_01420 | Not Available | Positive | 302246 - 303010 | 26414.5 |
| dna mismatch repair protein mutt | DI534_01425 | Not Available | Positive | 303015 - 303476 | 17575.2 |
| hypothetical protein | DI534_01430 | Not Available | Positive | 303546 - 304310 | 25106.6 |
| integrase | DI534_01435 | Not Available | Positive | 304611 - 305720 | 42552.2 |
| xre family transcriptional regulator | DI534_01440 | Not Available | Positive | 305717 - 306052 | 12676.3 |
| hypothetical protein | DI534_01445 | Not Available | Negative | 306417 - 306608 | 6857.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
