Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferrochelatase | DI534_14430 | Not Available | Positive | 3027238 - 3028362 | 40021.2 |
| hydroxymethylbilane synthase | DI534_14435 | Not Available | Positive | 3028308 - 3029276 | 32951.2 |
| uroporphyrinogen iii synthase | DI534_14440 | Not Available | Positive | 3029273 - 3030046 | 26663.8 |
| porphobilinogen synthase | DI534_14445 | Not Available | Positive | 3030043 - 3031026 | 34427.9 |
| glutamate-1-semialdehyde 2,1-aminomutase | DI534_14450 | Not Available | Positive | 3031023 - 3032351 | 45005.5 |
| duf1304 domain-containing protein | DI534_14455 | Not Available | Negative | 3032403 - 3032816 | 14356.1 |
| oxidoreductase | DI534_14460 | Not Available | Negative | 3032821 - 3033798 | 33701.3 |
| 6-phosphofructokinase | DI534_14465 | Not Available | Negative | 3033839 - 3034864 | 36284.7 |
| 3-methyladenine dna glycosylase | DI534_14480 | Not Available | Positive | 3035881 - 3036789 | 32905.6 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | DI534_14485 | Not Available | Positive | 3036808 - 3037092 | 10143.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
