Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alcohol dehydrogenase | DI534_14175 | Not Available | Positive | 2980262 - 2981221 | 33429.1 |
| hypothetical protein | DI534_14180 | Not Available | Negative | 2981178 - 2981366 | 6714.52 |
| hypothetical protein | DI534_14185 | Not Available | Negative | 2981377 - 2981841 | 15765.6 |
| rok-family transcriptional regulator | DI534_14190 | Not Available | Negative | 2981960 - 2983198 | 43189.6 |
| endoglucanase | DI534_14195 | Not Available | Negative | 2983195 - 2984634 | 53447.6 |
| sugar abc transporter permease | DI534_14200 | Not Available | Negative | 2984651 - 2985496 | 31062.2 |
| sugar abc transporter permease | DI534_14205 | Not Available | Negative | 2985483 - 2986361 | 31899.6 |
| abc transporter substrate-binding protein | DI534_14210 | Not Available | Negative | 2986414 - 2987661 | 43333.4 |
| beta-glucosidase | DI534_14215 | Not Available | Negative | 2987696 - 2989135 | 52255.9 |
| dna mismatch repair protein muts | DI534_14220 | Not Available | Positive | 2989244 - 2989516 | 10041.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
