Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase | DI534_01300 | Not Available | Positive | 276661 - 277893 | 44019.2 |
| error-prone dna polymerase | DI534_01305 | Not Available | Negative | 277933 - 281403 | 125634.0 |
| hypothetical protein | DI534_01310 | Not Available | Negative | 281430 - 282977 | 54924.7 |
| duf1905 domain-containing protein | DI534_01315 | Not Available | Negative | 283053 - 283361 | 11415.5 |
| hypothetical protein | DI534_01320 | Not Available | Negative | 283477 - 284196 | 25475.7 |
| duf1294 domain-containing protein | DI534_01325 | Not Available | Negative | 284226 - 284855 | 23006.1 |
| nerd domain protein | DI534_01330 | Not Available | Positive | 284969 - 285946 | 35557.7 |
| Trna-leu | Not Available | Not Available | Positive | 286120 - 286203 | Not Available |
| hypothetical protein | DI534_01340 | Not Available | Positive | 286287 - 287582 | 46293.2 |
| hypothetical protein | DI534_01345 | Not Available | Positive | 287595 - 288446 | 30337.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
