Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | DI534_13090 | Not Available | Positive | 2761634 - 2762281 | 24068.7 |
| 50s ribosomal protein l35 | DI534_13095 | Not Available | Positive | 2762281 - 2762475 | 6965.78 |
| 50s ribosomal protein l20 | DI534_13100 | Not Available | Positive | 2762511 - 2762897 | 14243.3 |
| rna methyltransferase | DI534_13105 | Not Available | Positive | 2762976 - 2763770 | 27692.3 |
| glutamate abc transporter atp-binding protein | DI534_13110 | Not Available | Positive | 2763850 - 2764587 | 26731.5 |
| abc transporter substrate-binding protein | DI534_13115 | Not Available | Positive | 2764652 - 2765530 | 30258.4 |
| amino acid abc transporter permease | DI534_13120 | Not Available | Positive | 2765599 - 2766246 | 22726.6 |
| polar amino acid abc transporter permease | DI534_13125 | Not Available | Positive | 2766243 - 2767169 | 34183.7 |
| phenylalanine--trna ligase subunit alpha | DI534_13130 | Not Available | Positive | 2767129 - 2768169 | 37933.1 |
| phenylalanine--trna ligase subunit beta | DI534_13135 | Not Available | Positive | 2768169 - 2770652 | 86426.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
