Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase hflx | DI534_13035 | Not Available | Positive | 2750883 - 2752418 | 55406.5 |
| 5,10-methylenetetrahydrofolate reductase | DI534_13040 | Not Available | Positive | 2752546 - 2753496 | 33483.3 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | DI534_13045 | Not Available | Positive | 2753493 - 2755799 | 83028.5 |
| repressor lexa | DI534_13050 | Not Available | Negative | 2755896 - 2756570 | 24283.3 |
| hypothetical protein | DI534_13055 | Not Available | Positive | 2756864 - 2757223 | 12294.8 |
| histidinol-phosphate transaminase | DI534_13060 | Not Available | Positive | 2757233 - 2758324 | 38881.4 |
| imidazoleglycerol-phosphate dehydratase hisb | DI534_13065 | Not Available | Positive | 2758329 - 2758934 | 21576.5 |
| imidazole glycerol phosphate synthase subunit hish | DI534_13070 | Not Available | Positive | 2758937 - 2759569 | 22337.8 |
| bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase pria | DI534_13075 | Not Available | Positive | 2759638 - 2760387 | 25994.8 |
| duf1844 domain-containing protein | DI534_13085 | Not Available | Negative | 2761070 - 2761429 | 12579.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
