Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | DI534_12985 | Not Available | Positive | 2742992 - 2743588 | 21835.3 |
| hypothetical protein | DI534_12990 | Not Available | Positive | 2743585 - 2744085 | 16733.2 |
| transcriptional regulator | DI534_12995 | Not Available | Positive | 2744222 - 2744530 | 11054.3 |
| duf3046 domain-containing protein | DI534_13000 | Not Available | Positive | 2744527 - 2744748 | 7937.54 |
| recombinase reca | DI534_13005 | Not Available | Positive | 2745012 - 2746091 | 38263.0 |
| hypothetical protein | DI534_13010 | Not Available | Positive | 2746112 - 2746783 | 24275.5 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DI534_13015 | Not Available | Positive | 2746822 - 2748330 | 54547.8 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DI534_13020 | Not Available | Positive | 2748327 - 2749259 | 33330.6 |
| diaminopimelate epimerase | DI534_13025 | Not Available | Positive | 2749262 - 2750119 | 29214.6 |
| 16s rrna methyltransferase | DI534_13030 | Not Available | Negative | 2750192 - 2750839 | 23285.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
