Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| padr family transcriptional regulator | DI534_12780 | Not Available | Positive | 2701623 - 2701964 | 12380.8 |
| hypothetical protein | DI534_12785 | Not Available | Positive | 2701961 - 2702521 | 19836.2 |
| dna repair protein reco | DI534_12790 | Not Available | Positive | 2702561 - 2703292 | 25898.9 |
| isoprenyl transferase | DI534_12795 | Not Available | Positive | 2703289 - 2704092 | 30327.2 |
| hypothetical protein | DI534_12800 | Not Available | Positive | 2704136 - 2704921 | 28120.9 |
| prsw family intramembrane metalloprotease | DI534_12805 | Not Available | Positive | 2705118 - 2706179 | 37380.5 |
| hypothetical protein | DI534_12810 | Not Available | Negative | 2706201 - 2707220 | 38251.7 |
| serine protease | DI534_12815 | Not Available | Negative | 2707467 - 2708666 | 40242.7 |
| hypothetical protein | DI534_12820 | Not Available | Negative | 2708697 - 2708933 | 8351.2 |
| hypothetical protein | DI534_12825 | Not Available | Positive | 2709003 - 2709500 | 17131.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
