Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin/fe(3+)-siderophore abc transporter atp-binding protein | DI534_12220 | Not Available | Negative | 2585458 - 2586258 | 28637.6 |
| hypothetical protein | DI534_12225 | Not Available | Negative | 2586255 - 2588474 | 79687.7 |
| abc transporter substrate-binding protein | DI534_12230 | Not Available | Negative | 2588377 - 2589396 | 35675.0 |
| peptidase m3 | DI534_12235 | Not Available | Negative | 2589592 - 2591610 | 74367.1 |
| sam-dependent methyltransferase | DI534_12240 | Not Available | Positive | 2591634 - 2592443 | 29110.1 |
| hypothetical protein | DI534_12245 | Not Available | Negative | 2592478 - 2592705 | 8324.92 |
| gnat family n-acetyltransferase | DI534_12250 | Not Available | Negative | 2592705 - 2593148 | 16172.9 |
| valine--trna ligase | DI534_12255 | Not Available | Negative | 2593150 - 2595774 | 96183.6 |
| hypothetical protein | DI534_12260 | Not Available | Negative | 2595876 - 2596559 | 23239.0 |
| gntr family transcriptional regulator | DI534_12265 | Not Available | Positive | 2596668 - 2597021 | 12450.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
