Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxamine 5-phosphate oxidase | DI534_12170 | Not Available | Positive | 2576485 - 2577000 | 18380.0 |
| hypothetical protein | DI534_12175 | Not Available | Negative | 2577010 - 2577498 | 17779.7 |
| atp-dependent clp protease proteolytic subunit | DI534_12180 | Not Available | Positive | 2577793 - 2578401 | 21568.6 |
| atp-dependent clp protease proteolytic subunit | DI534_12185 | Not Available | Positive | 2578429 - 2579118 | 25091.0 |
| transporter | DI534_12190 | Not Available | Negative | 2579201 - 2579788 | 19474.0 |
| hypothetical protein | DI534_12195 | Not Available | Negative | 2579865 - 2580464 | 20054.0 |
| atp-dependent clp protease atp-binding subunit clpx | DI534_12200 | Not Available | Positive | 2580634 - 2581911 | 46312.9 |
| benzoate transporter | DI534_12205 | Not Available | Positive | 2581978 - 2583174 | 39589.4 |
| mfs transporter | DI534_12210 | Not Available | Positive | 2583171 - 2584499 | 45104.6 |
| siderophore-interacting protein | DI534_12215 | Not Available | Negative | 2584542 - 2585468 | 33210.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
