Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_01100 | Not Available | Negative | 236901 - 238154 | 46477.1 |
| carbohydrate abc transporter permease | DI534_01105 | Not Available | Negative | 238028 - 238918 | 31958.2 |
| sugar abc transporter permease | DI534_01110 | Not Available | Negative | 238980 - 239939 | 35960.2 |
| hypothetical protein | DI534_01115 | Not Available | Negative | 239987 - 241291 | 48128.3 |
| glucuronate isomerase | DI534_01120 | Not Available | Negative | 241369 - 242808 | 53589.3 |
| laci family transcriptional regulator | DI534_01125 | Not Available | Positive | 242894 - 244018 | 39914.8 |
| protoheme ix farnesyltransferase | DI534_01130 | Not Available | Positive | 244244 - 245230 | 35568.3 |
| cytochrome b | DI534_01135 | Not Available | Positive | 245227 - 246216 | 34683.9 |
| fe-s cluster assembly protein sufb | DI534_01140 | Not Available | Positive | 246375 - 247793 | 52516.2 |
| fe-s cluster assembly protein sufd | DI534_01145 | Not Available | Positive | 247827 - 248963 | 40925.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
