Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deferrochelatase/peroxidase efeb | DI534_11610 | Not Available | Negative | 2471217 - 2472524 | 45313.9 |
| hypothetical protein | DI534_11615 | Not Available | Negative | 2472525 - 2473745 | 42835.7 |
| high-affinity fe2+/pb2+ permease | DI534_11620 | Not Available | Negative | 2473811 - 2474695 | 30962.4 |
| hypothetical protein | DI534_11625 | Not Available | Positive | 2474816 - 2475181 | 11820.8 |
| ferredoxin | DI534_11630 | Not Available | Positive | 2475191 - 2475511 | 11602.7 |
| succinyldiaminopimelate transaminase | DI534_11635 | Not Available | Positive | 2475527 - 2476633 | 39270.6 |
| citrate (si)-synthase | DI534_11640 | Not Available | Positive | 2476630 - 2477925 | 48007.3 |
| hypothetical protein | DI534_11645 | Not Available | Negative | 2478186 - 2479052 | 32485.9 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | DI534_11650 | Not Available | Negative | 2479291 - 2480214 | 31444.7 |
| succinyl-diaminopimelate desuccinylase | DI534_11655 | Not Available | Positive | 2480248 - 2481318 | 37704.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
