Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formimidoylglutamase | DI534_11510 | Not Available | Positive | 2446236 - 2447072 | 28285.4 |
| imidazolonepropionase | DI534_11515 | Not Available | Positive | 2447069 - 2448232 | 40150.8 |
| hypothetical protein | DI534_11520 | Not Available | Negative | 2448616 - 2451732 | 106540.0 |
| hypothetical protein | DI534_11525 | Not Available | Positive | 2451839 - 2452474 | 21636.4 |
| glycine cleavage system aminomethyltransferase gcvt | DI534_11530 | Not Available | Positive | 2452790 - 2453926 | 39559.0 |
| glycine cleavage system protein gcvh | DI534_11535 | Not Available | Positive | 2453928 - 2454299 | 12867.1 |
| glycine dehydrogenase (aminomethyl-transferring) | DI534_11540 | Not Available | Positive | 2454296 - 2457133 | 100183.0 |
| peroxiredoxin | DI534_11545 | Not Available | Negative | 2457212 - 2457736 | 19179.0 |
| cpbp family intramembrane metalloprotease domain-containing protein | DI534_11550 | Not Available | Negative | 2458002 - 2458835 | 30294.4 |
| thiol-disulfide oxidoreductase | DI534_11555 | Not Available | Negative | 2458832 - 2459236 | 15115.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
