Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| competence/damage-inducible protein a | DI534_11095 | Not Available | Positive | 2358335 - 2359093 | 26698.1 |
| hypothetical protein | DI534_11100 | Not Available | Positive | 2359162 - 2359512 | 13365.5 |
| hypothetical protein | DI534_11105 | Not Available | Positive | 2359554 - 2359904 | 13536.8 |
| abc transporter | DI534_11110 | Not Available | Positive | 2360818 - 2362383 | 56385.4 |
| abc transporter permease | DI534_11115 | Not Available | Positive | 2362380 - 2363471 | 37796.0 |
| abc transporter permease | DI534_11120 | Not Available | Positive | 2363468 - 2364391 | 31763.9 |
| bmp family abc transporter substrate-binding protein | DI534_11125 | Not Available | Positive | 2364402 - 2365490 | 38294.2 |
| (2fe-2s)-binding protein | DI534_11130 | Not Available | Negative | 2365543 - 2366610 | 39797.1 |
| lysr family transcriptional regulator | DI534_11135 | Not Available | Positive | 2366720 - 2367628 | 32586.4 |
| rna polymerase subunit sigma-70 | DI534_11140 | Not Available | Positive | 2368141 - 2368674 | 20593.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
