Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside-binding protein | DI534_10895 | Not Available | Positive | 2310138 - 2310923 | 28807.5 |
| sugar abc transporter atp-binding protein | DI534_10900 | Not Available | Positive | 2310883 - 2312607 | 61645.3 |
| abc transporter permease | DI534_10905 | Not Available | Positive | 2312604 - 2313602 | 34321.6 |
| multidrug efflux rnd transporter permease subunit | DI534_10910 | Not Available | Negative | 2314241 - 2317384 | 110758.0 |
| efflux transporter periplasmic adaptor subunit | DI534_10915 | Not Available | Negative | 2317397 - 2318530 | 40106.7 |
| tetr family transcriptional regulator | DI534_10920 | Not Available | Negative | 2318693 - 2319253 | 20404.3 |
| hypothetical protein | DI534_10925 | Not Available | Negative | 2319926 - 2323261 | 123278.0 |
| formaldehyde-activating enzyme | DI534_10930 | Not Available | Negative | 2323336 - 2323848 | 17939.3 |
| ornithine cyclodeaminase | DI534_10935 | Not Available | Negative | 2324074 - 2325039 | 33754.1 |
| alanine racemase | DI534_10940 | Not Available | Negative | 2325081 - 2326244 | 42098.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
