Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_10630 | Not Available | Negative | 2249807 - 2250070 | 9247.02 |
| metal-binding protein | DI534_10635 | Not Available | Negative | 2250070 - 2250435 | 12469.0 |
| cobalt transporter | DI534_10640 | Not Available | Negative | 2250478 - 2251182 | 23756.9 |
| cobalt transporter | DI534_10645 | Not Available | Negative | 2251190 - 2251375 | 6426.73 |
| cobalamin biosynthesis protein cobd | DI534_10650 | Not Available | Negative | 2251694 - 2252665 | 33685.9 |
| threonine-phosphate decarboxylase | DI534_10655 | Not Available | Positive | 2252742 - 2253785 | 37126.7 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DI534_10660 | Not Available | Positive | 2253782 - 2254879 | 37379.8 |
| hypothetical protein | DI534_10665 | Not Available | Negative | 2254887 - 2256002 | 40510.5 |
| tetrahydromethanopterin s-methyltransferase subunit h | DI534_10670 | Not Available | Negative | 2255999 - 2256925 | 33105.9 |
| formyltetrahydrofolate deformylase | DI534_10675 | Not Available | Positive | 2257338 - 2258198 | 32293.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
