Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 4-epimerase | DI534_10205 | Not Available | Positive | 2151041 - 2151904 | 31796.7 |
| hypothetical protein | DI534_10210 | Not Available | Negative | 2151862 - 2153208 | 46802.1 |
| hypothetical protein | DI534_10215 | Not Available | Negative | 2153208 - 2156165 | 108332.0 |
| laci family transcriptional regulator | DI534_10220 | Not Available | Positive | 2156248 - 2157267 | 35876.9 |
| abc transporter substrate-binding protein | DI534_10225 | Not Available | Positive | 2157384 - 2158712 | 46971.8 |
| abc transporter permease | DI534_10230 | Not Available | Positive | 2158712 - 2159656 | 34645.5 |
| sugar abc transporter permease | DI534_10235 | Not Available | Positive | 2159653 - 2160501 | 31019.6 |
| beta-mannosidase | DI534_10240 | Not Available | Positive | 2160498 - 2162957 | 88477.0 |
| 1,4-beta-xylanase | DI534_10245 | Not Available | Positive | 2162990 - 2163910 | 34193.0 |
| hypothetical protein | DI534_10250 | Not Available | Positive | 2163910 - 2164833 | 31031.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
