Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioesterase | DI534_00950 | Not Available | Negative | 200666 - 201109 | 15514.8 |
| dna polymerase i | DI534_00955 | Not Available | Positive | 201187 - 203829 | 96744.0 |
| hpr family phosphocarrier protein | DI534_00960 | Not Available | Positive | 203882 - 204142 | 8768.43 |
| duf885 domain-containing protein | DI534_00965 | Not Available | Positive | 204204 - 205898 | 62395.4 |
| duf4166 domain-containing protein | DI534_00970 | Not Available | Positive | 205895 - 206524 | 23571.6 |
| nad-dependent epimerase | DI534_00975 | Not Available | Positive | 206521 - 207504 | 35609.6 |
| 30s ribosomal protein s1 | DI534_00980 | Not Available | Positive | 207610 - 209070 | 53141.5 |
| duf4126 domain-containing protein | DI534_00985 | Not Available | Negative | 209155 - 209775 | 21467.9 |
| gnat family n-acetyltransferase | DI534_00990 | Not Available | Positive | 209804 - 210595 | 28826.3 |
| dephospho-coa kinase | DI534_00995 | Not Available | Positive | 210637 - 211254 | 21688.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
