Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tyrosine phosphatase | DI534_09595 | Not Available | Negative | 2026708 - 2027229 | 19262.8 |
| hypothetical protein | DI534_09600 | Not Available | Positive | 2027239 - 2027625 | 14101.7 |
| hypothetical protein | DI534_09605 | Not Available | Positive | 2027612 - 2029084 | 51359.4 |
| hypothetical protein | DI534_09610 | Not Available | Negative | 2029062 - 2029478 | 15350.5 |
| aminotransferase | DI534_09615 | Not Available | Positive | 2029518 - 2030573 | 37133.2 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | DI534_09620 | Not Available | Positive | 2030609 - 2031727 | 40996.9 |
| alpha-ketoacid dehydrogenase subunit beta | DI534_09625 | Not Available | Positive | 2031724 - 2032704 | 35037.0 |
| branched-chain alpha-keto acid dehydrogenase subunit e2 | DI534_09630 | Not Available | Positive | 2032755 - 2034086 | 46468.6 |
| hypothetical protein | DI534_09635 | Not Available | Positive | 2034271 - 2035116 | 31681.6 |
| hypothetical protein | DI534_09640 | Not Available | Negative | 2035099 - 2035758 | 23923.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
