Leifsonia xyli

BacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia xyli is a Gram-positive bacterium that resides in the xylem of host plants. It is characterized by a bacilli shape and is strictly aerobic, requiring oxygen for growth. L. xyli exhibits a mesophilic temperature range with an optimal growth temperature of 20°C. The organism has one replicon and is classified as free-living, indicating it does not rely on a host for its survival outside of its ecological relationships. This bacterium is associated with significant agricultural impacts, particularly on crops such as Oryza sativa (rice), Zea mays subsp. mays (maize), and Cynodon dactylon (Bermudagrass). It is notably linked to ratoon stunting disease, which can adversely affect the yield and health of these plants. The disease manifests itself in reduced growth and productivity, posing a challenge for farmers and crop management. The presence of L. xyli in the xylem suggests a specialized niche adaptation, allowing it to thrive within the vascular systems of its hosts. Its ability to cause ratoon stunting disease indicates that L. xyli plays a role in plant health dynamics and can impact agricultural practices. Understanding its biology and ecological interactions is crucial for developing management strategies to mitigate its effects on crops. The accession QFQR00000000.1 provides a genomic reference for further studies on this organism, enhancing the potential for targeted research and potential biocontrol measures.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
Habitatxylem
Biotic relationshipFree living
Host(s)Oryza sativa, Zea mays subsp. mays, Cynodon dactylon
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Leifsonia xyli isolate S2_003_000_R2_12

Gene Summary

Adenine Count

539259 bp

Thymine Count

542967 bp

Guanine Count

1228610 bp

Cytosine Count

1218057 bp

Genome Length

3528893 bp

Protein-coding Genes

3206 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein tyrosine phosphataseDI534_09595Not AvailableNegative2026708 - 202722919262.8
hypothetical proteinDI534_09600Not AvailablePositive2027239 - 202762514101.7
hypothetical proteinDI534_09605Not AvailablePositive2027612 - 202908451359.4
hypothetical proteinDI534_09610Not AvailableNegative2029062 - 202947815350.5
aminotransferaseDI534_09615Not AvailablePositive2029518 - 203057337133.2
pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alphaDI534_09620Not AvailablePositive2030609 - 203172740996.9
alpha-ketoacid dehydrogenase subunit betaDI534_09625Not AvailablePositive2031724 - 203270435037.0
branched-chain alpha-keto acid dehydrogenase subunit e2DI534_09630Not AvailablePositive2032755 - 203408646468.6
hypothetical proteinDI534_09635Not AvailablePositive2034271 - 203511631681.6
hypothetical proteinDI534_09640Not AvailableNegative2035099 - 203575823923.3

Displaying genes 1891 – 1900 of 3263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ratoon stunting diseaseCausesPMC2516522
Ratoon-stunting diseaseCausesPMC2516522

Displaying health effects 1 – 2 of 2 in total