Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DI534_08885 | Not Available | Negative | 1883604 - 1884152 | 20311.1 |
| eama family transporter | DI534_08890 | Not Available | Positive | 1884228 - 1885280 | 35823.9 |
| histidine--trna ligase | DI534_08895 | Not Available | Positive | 1885293 - 1886582 | 46463.4 |
| phosphopyruvate hydratase | DI534_08900 | Not Available | Positive | 1886847 - 1888121 | 44812.8 |
| hypothetical protein | DI534_08905 | Not Available | Positive | 1888284 - 1888754 | 16584.6 |
| duf501 domain-containing protein | DI534_08910 | Not Available | Positive | 1888751 - 1889269 | 17617.8 |
| peptidase s8 | DI534_08915 | Not Available | Positive | 1889271 - 1890503 | 41288.7 |
| nadh dehydrogenase fad-containing subunit | DI534_08920 | Not Available | Positive | 1890543 - 1891865 | 48031.9 |
| Trna-leu | Not Available | Not Available | Positive | 1891894 - 1891970 | Not Available |
| tetr family transcriptional regulator | DI534_08930 | Not Available | Positive | 1892174 - 1892788 | 21633.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
