Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | DI534_08785 | Not Available | Negative | 1860472 - 1861755 | 45982.0 |
| abc transporter | DI534_08790 | Not Available | Positive | 1861880 - 1862620 | 26200.6 |
| abc transporter permease | DI534_08795 | Not Available | Positive | 1862617 - 1863957 | 45016.1 |
| hypothetical protein | DI534_08800 | Not Available | Positive | 1864088 - 1867333 | 114647.0 |
| hypothetical protein | DI534_08805 | Not Available | Positive | 1867383 - 1867724 | 11860.8 |
| ribose-phosphate diphosphokinase | DI534_08810 | Not Available | Positive | 1867849 - 1868823 | 35322.6 |
| hypothetical protein | DI534_08815 | Not Available | Negative | 1868836 - 1869204 | 12797.5 |
| acyl-coa transferase | DI534_08820 | Not Available | Positive | 1869289 - 1870650 | 47193.3 |
| phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating) | DI534_08825 | Not Available | Negative | 1870661 - 1872238 | 55301.1 |
| gluconate kinase | DI534_08830 | Not Available | Positive | 1872144 - 1872704 | 19552.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
