Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotyrosine protein phosphatase | DI534_08740 | Not Available | Positive | 1853035 - 1853703 | 24409.0 |
| flavoprotein | DI534_08745 | Not Available | Negative | 1853714 - 1855042 | 46432.9 |
| transcriptional regulator | DI534_08750 | Not Available | Positive | 1855159 - 1855473 | 11110.4 |
| hypothetical protein | DI534_08755 | Not Available | Negative | 1855494 - 1856543 | 37616.7 |
| hypothetical protein | DI534_08760 | Not Available | Negative | 1856540 - 1856857 | 11757.8 |
| Trna-pseudo | Not Available | Not Available | Positive | 1857186 - 1857264 | Not Available |
| is3 family transposase | DI534_08765 | Not Available | Positive | 1858068 - 1858799 | 27360.8 |
| hypothetical protein | DI534_08770 | Not Available | Positive | 1858670 - 1858987 | 11771.9 |
| cyclase | DI534_08775 | Not Available | Negative | 1859170 - 1859613 | 16554.1 |
| dna-binding response regulator | DI534_08780 | Not Available | Negative | 1859775 - 1860491 | 25761.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
