Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_08165 | Not Available | Positive | 1735384 - 1735965 | 21341.8 |
| dna-binding protein | DI534_08170 | Not Available | Negative | 1735999 - 1736277 | 10333.2 |
| hypothetical protein | DI534_08175 | Not Available | Positive | 1736419 - 1737051 | 20968.2 |
| regulator | DI534_08180 | Not Available | Positive | 1737054 - 1738298 | 42774.3 |
| atpase | DI534_08185 | Not Available | Positive | 1738303 - 1739799 | 54073.3 |
| whib family transcriptional regulator | DI534_08190 | Not Available | Negative | 1739824 - 1740072 | 9087.69 |
| hypothetical protein | DI534_08195 | Not Available | Positive | 1740272 - 1740676 | 14190.9 |
| lysr family transcriptional regulator | DI534_08200 | Not Available | Negative | 1740773 - 1741672 | 32702.2 |
| 1-pyrroline-5-carboxylate dehydrogenase | DI534_08205 | Not Available | Positive | 1741839 - 1745234 | 120703.0 |
| peroxiredoxin | DI534_08210 | Not Available | Negative | 1745333 - 1745848 | 18542.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
