Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | DI534_07610 | Not Available | Positive | 1612257 - 1612682 | 14936.8 |
| thymidine phosphorylase | DI534_07615 | Not Available | Positive | 1612682 - 1613971 | 45168.3 |
| hypothetical protein | DI534_07620 | Not Available | Negative | 1614357 - 1615271 | 34146.1 |
| ribonucleoside hydrolase | DI534_07625 | Not Available | Negative | 1615566 - 1616513 | 33341.9 |
| adenosylhomocysteinase | DI534_07630 | Not Available | Positive | 1616585 - 1617823 | 43429.1 |
| iclr family transcriptional regulator | DI534_07635 | Not Available | Positive | 1617828 - 1618562 | 25638.5 |
| adenosine deaminase | DI534_07640 | Not Available | Positive | 1618636 - 1619757 | 39978.9 |
| pts ascorbate transporter subunit iia | DI534_07645 | Not Available | Positive | 1619757 - 1620218 | 15662.8 |
| pts ascorbate transporter subunit iib | DI534_07650 | Not Available | Positive | 1620215 - 1620487 | 9648.71 |
| phosphomannomutase | DI534_07655 | Not Available | Negative | 1620517 - 1622193 | 58681.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
