Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction resolvase ruvx | DI534_00705 | Not Available | Positive | 150454 - 150903 | 15706.9 |
| endolytic transglycosylase mltg | DI534_00710 | Not Available | Positive | 150943 - 152157 | 42107.6 |
| shikimate dehydrogenase | DI534_00715 | Not Available | Positive | 152150 - 152977 | 28747.5 |
| chorismate synthase | DI534_00720 | Not Available | Positive | 152986 - 154185 | 42224.6 |
| shikimate kinase | DI534_00725 | Not Available | Positive | 154182 - 154694 | 18304.7 |
| 3-dehydroquinate synthase | DI534_00730 | Not Available | Positive | 154691 - 155776 | 39081.1 |
| 3-dehydroquinate dehydratase | DI534_00735 | Not Available | Positive | 155815 - 156252 | 15784.8 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 156302 - 156398 | Not Available |
| elongation factor p | DI534_00740 | Not Available | Positive | 156331 - 156888 | 20271.9 |
| transcription antitermination factor nusb | DI534_00745 | Not Available | Positive | 156895 - 157305 | 14879.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
