Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | DI534_07410 | Not Available | Positive | 1570277 - 1570735 | 15266.6 |
| acetate--coa ligase | DI534_07415 | Not Available | Negative | 1570810 - 1572786 | 71967.8 |
| hypothetical protein | DI534_07420 | Not Available | Positive | 1573117 - 1574217 | 38521.4 |
| pilus assembly protein tadb | DI534_07425 | Not Available | Positive | 1574214 - 1575140 | 30976.6 |
| duf4244 domain-containing protein | DI534_07430 | Not Available | Positive | 1575266 - 1575457 | 6868.51 |
| hypothetical protein | DI534_07435 | Not Available | Positive | 1575435 - 1575785 | 11168.4 |
| helicase | DI534_07440 | Not Available | Positive | 1575782 - 1576171 | 12989.0 |
| type i dna topoisomerase | DI534_07445 | Not Available | Positive | 1576268 - 1579015 | 99665.6 |
| dtmp kinase | DI534_07450 | Not Available | Positive | 1579017 - 1579652 | 23236.6 |
| dna polymerase iii subunit delta' | DI534_07455 | Not Available | Positive | 1579675 - 1580820 | 40967.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
